Publications from IOS-1238812

Journal articles:

2014

22. Yu P, Lor P, Ludwig-Müller J, Hegeman AD and Cohen JD (2014) Quantitative evaluation of IAA conjugate pools in Arabidopsis thalianaPlanta1-10, doi: 10.1007/s00425-014-2206-z.

21. Martin AC, Johnston E, Xing C, and Hegeman AD (2014) Measuring the chemical and cytotoxic variability of commercially available kava (Piper methysticum G. Forster), PLOS One9(11): e111572.

20. Moore M, Ostry M, Hegeman AD, and Martin AC (2014) Inhibition ofOphiognomonia clavigignenti-juglandacearum by Juglans species bark extracts, Plant Dis, published ahead of print on line: http://dx.doi.org/10.1094/PDIS-06-14-0642-RE.

19. Tivendale ND, Ross JJ, Cohen JD (2014) The shifting paradigms of auxin biosynthesis. Trends in Plant Science29: 44-51.

18. Park S, Seo Y-S and Hegeman AD (2014) Plant metabolomics for plant chemical responses to belowground community change by climate change, J Plant Biol57:137-149.

17. Gillman JH, Hegeman AD, Sharp RG (2014) Clarifying the role of maples in atypical myopathy, Equine Vet J, 46(2):135-6.

16. Roe MR, Cohen JD, Hegeman AD (2014) Targeted deuteration of polyphenolics for their qualitative and quantitative metabolomic analysis in plant-derived extracts, Methods Mol Biol1083:17-29.

15. Yu P, Hegeman AD, Cohen JD (2014) A facile means for the identification of indolic compounds from plant tissues, Plant J79, 1065–1075.

14. Roe MR, Carlson JL, McManimon TM, Hegeman AD, and Tong CBS (2014) Differential accumulation and degradation of anthocyanins in Red Norland periderm is dependent on soil type and tuber storage duration, Am J Potato Res, 1–10.

13. Martin AC, Pawlus AD, Jewett EM, Wyse DL, Angerhofer CK, Hegeman AD (2014) Evaluating solvent extraction systems using metabolomics approaches, RSC Adv, 4: 26325-26334.

12. Unger L, Nicholson A, Jewett EM, Gerber V, Hegeman AD, Sweetman L. and Valberg S (2014), Hypoglycin A concentrations in seeds of Acer pseudoplatanus trees growing on atypical myopathy-affected and control pastures. J Vet Intern Med28(4): 1289–1293.

11. Wang Y, Freund DM, Magdaong NM, Urban VS, Frank HA, Hegeman AD, Tang JK (2014) Impact of esterified bacteriochlorophylls on the biogenesis of chlorosomes in Chloroflexus aurantiacusPhotosynth Res122(1): 69-86.

10. Roe MR, Cohen JD, Hegeman AD (2014) Regioselective solvent-phase deuteration of polyphenolic compounds informs their identification by mass spectrometry, Anal Biochem452:76-85.

9. Kwak H, Hegeman AD, and Park S (2014) Seasonal changes in metabolic profiles of galls and leaves of Rhus chinensis using gas chromatography mass spectrometry and liquid chromatography quadrupole time-of-flight mass spectrometry, J Plant Biol57:127-135.

8. Spiess GM, Hausman A, Yu P, Cohen JD, Rampey RA, and Zolman BK (2014) Auxin input pathway disruptions are mitigated by changes in auxin biosynthetic gene expression in Arabidopsis. Plant Physiol 165:1092-1104.

2013

7. DeMason DA, Chetty V, Barkawi LS, Liu X and Cohen JD (2013) Unifoliata-Afila interactions in pea leaf morphogenesis, Am J Bot100(3):478-495.

6. Li W, Zhou Y, Liu X, Yu P, Cohen JD, Meyerowitz EM (2013) LEAFY Controls Auxin Response Pathways in Floral Primordium Formation, Sci Signal6: ra23.

5. Wilson MB, Spivak M, Hegeman AD, Rendahl A, Cohen JD (2013) Metabolomics reveals the origins of antimicrobial plant resins collected by honey bees. PLOS One8(10): e77512.

4. Yu H, Karampelias M, Robert S, Peer WA, Swarup R, Ye S, Ge L, Cohen JD, Murphy A, Friml J, Estelle M (2013) ROOT ULTRAVIOLET B-SENSITIVE1/WEAK AUXIN RESPONSE3 is essential for polar auxin transport in ArabidopsisPlant Phys162: 965-976.

3. Mazhar S, Cohen JD, Hasnain S (2013) Auxin producing non-heterocystous Cyanobacteria and their impact on the growth and endogenous auxin homeostasis of wheat. J Basic Microbiol, 53(12): 996-1003.

2. Yerramsetty V, Roe M, Cohen JD, Hegeman A, Ismail B (2013) Development of a simple, fast and accurate method for the direct quantification of selective estrogen receptor modulators in biological fluids using stable isotope dilution mass spectrometry, J Agric and Food Chem61:7028-7037.

2012

1. Liu X, Hegeman AD, Gardner G, and Cohen, JD (2012) Protocol: High-throughput and quantitative assays of auxin and auxin precursors from minute tissue samples, Plant Methods8(1): 31.


Published abstracts/Invited talks:

2014

34. Hegeman AD (October 1, 2014) Department of Botany and Plant Pathology Seminar Series, “Stable isotopes and mass spectrometry for the analysis of plant metabolites”, Purdue University, West Lafayette, IN, (invited seminar).

33. Martin AC, Freund DM, Hegeman AD, Masujima T (2014) Real-time chemical profiling and direct localization of living plant cell chemical contents by live single-cell mass spectrometry. JSPS Summer Program Orientation, Hayama, Kanagawa Japan and RIKEN Quantitative Biology Center Retreat, Wakayama, Japan, (poster).

32. Hegeman AD (August 21, 2014) 31st annual Mid-Atlantic Plant Molecular Biology Society Meeting, “Stable isotopes and mass spectrometry for the analysis of plant metabolites”, USDA, Beltsville, MD, (invited seminar).

31. Hoffman L, Watkins E, and Hegeman AD (2014) “Improving Winter hardiness of Temperate Perennial Grasses using Metabolomics-Assisted Breeding”, American Society of Plant Biologists, Annual Meeting Plant Biology 2014, Portland, OR, (Minisymposium talk).

30. Tivendale ND, Cohen JD, and Hegeman AD (2014) “Methylation of short-chain aliphatic carboxylic acids for metabolic flux analysis by GC-MS”, Annual Meeting Plant Biology 2014, Portland, OR, (poster).

29. Freund DM, (2014) A Systems Biology Approach to Understanding Kidney Physiology and Plant Metabolism. The College of St Scholastica Duluth, MN invited speaker for STEM undergraduates (oral).

28. Freund DM, Martin AC, Cohen JD, Hegeman AD (2014) Direct Tissue Spray Ionization of Living Plants by Mass Spectrometry. Microbial Plant Genome Institute Seminar, University of Minnesota, St. Paul, MN (oral).

27. Abate-Pella D, Freund DM, Hegeman AD, Boswell PG, & Cohen JD (2014) Improved separation and detection of carotenoids by UPLC-MS/MS. Minnesota Chromatography Forum Spring Symposium, Minneapolis, MN (oral).

26. Freund DM, Cohen JD and Hegeman AD (2014) “Direct Tissue Spray Ionization of Living Plants by Mass Spectrometry for Metabolomics”, American Society of Plant Biologists, Annual Meeting Plant Biology 2014, Portland, OR, (Minisymposium talk).

25. Carlson J, Roe M, McManimon T, Hegeman AD, and Tong C (2014) “Anthocyanin degradation in red Norland potatoes”, The FASEB Journal28(1 Supplement), 259.2 (poster).

24. Cohen JD (July 8, 2014) Norwegian University of Life Science, “Targeted metabolomics in plant hormone research”, Graduate Program in Plant Sciences, (invited seminar).

23. Cohen JD, Yu P, Kreiser M, Chen J, Hegeman A (June 29 – July 4, 2014) “Targeted metabolomics in auxin research” (Abstract 01-2, page 19), International Symposium on Auxins and Cytokinins in Plant Development – ACPD 2014, Prague, (invited oral).

22. Yu P, Hegeman A, Cohen J (June 29 – July 4, 2014) “A facile means for the identification of indolic compounds from plant tissues” (Abstract 01-5, page 21), International Symposium on Auxins and Cytokinins in Plant Development – ACPD 2014, Prague, (invited oral).

21. Kreiser M, Cohen JD, Wyse D (June 29 – July 4, 2014) “Conversion of indole-3-butyric acid to indole-3-acetic acid in hazelnut shoot tissue” (Abstract P1-10, page 29), International Symposium on Auxins and Cytokinins in Plant Development – ACPD 2014, Prague, (poster).

20. Yu P, Hegeman AD, Cohen JD (June 23–26, 2014) “A facile means for the identification of indolic compounds” (Abstract P15 Poster Session Marica East 24th June). Metabolomics 2014 (10th Anniversary International Conference of the Metabolomics Society), Tsuruoka, Japan (poster).

19. Peters C, Cohen JD, and Hegeman AD (2014) “13CO2 growth chamber enabling high enrichment in vivo labeling over complete plant life cycle for metabolic flux analysis”, J. Am. Soc. Mass Spec. 25(S1), Baltimore, MD, (poster).

18. Brockman SA, Strauss M, Freund DM, Cohen JD, and Hegeman AD (2014) “Identification of potential chemical giraffe-feeding deterrents inAcacia robusta using untargeted metabolomics with LC-ESI-HRMS”, J. Am. Soc. Mass Spec. 25(S1), Baltimore, MD, (poster).

17. Xu Y, Freund DM, Plesofsky N, Brambl R, Brockman SA, Hegeman AD, and Cohen JD (2014) “Untargeted metabolomics of Neurospora crassa wild type and the Os-2 mutant under heat shock stress and 2-deoxyglucose treatment”, J. Am. Soc. Mass Spec. 25(S1), Baltimore, MD, (poster).

16. Yu, P, Slovin JP, Hegeman AD, and Cohen JD (2014) “Indole metabolomics: a facile means for the identification of indolic compounds from plant tissues”, J. Am. Soc. Mass Spec. 25(S1), Baltimore, MD, (poster).

15. Freund DM, Martin AC, Cohen JD, and Hegeman AD (2014) “Direct Tissue Spray Ionization of Living Plants by Mass Spectrometry for Metabolomics”, J. Am. Soc. Mass Spec. 25(S1), Baltimore, MD, (poster).

14. Abate-Pella D, Freund DM, Ma Y, Beck B, Schymanski E, Kind T, Hegeman AD, and Boswell P (2014) “Retention ‘Projection’ Enables Reliable Use of Shared HPLC Metabolite Retention Data Across Labs and Methods”,J. Am. Soc. Mass Spec. 25(S1), Baltimore, MD, (poster).

2013

13. Teh SL, Haggerty L, Hegeman AD, and Luby J (2013) “Patterns of Variation for Sugar and Organic Acid Composition during Berry Ripening in Cold Climate Wine Grape Cultivars”, American Society for Horticultural Science annual meeting, July 22-25, 2013, Palm Desert, CA (poster).

12. Cohen JD (June18-22, 2013) the 21st Conference of the International Plant Growth Substances Association (IPGSA), “Toward single cell targeted metabolomics in plant hormone research”, Shanghai, China, (invited speaker).

11. Hegeman AD (May 23, 2013) Institute of Biological Chemistry Seminar Series, “Improving Methodology for Plant Metabolomics”, Washington State University, Pullman, WA, (invited seminar).

10. Fan K-T, Cohen JD, Gray WM, and Hegeman AD (2013) “Absolute quantification of TIR1/AFB proteins in Arabidopsis using the QconCAT strategy”, J. Am. Soc. Mass Spec. 24(S1), Minneapolis, MN, (poster).

9. Martin AC, Pawlus AD, Jewett E, Brockman S, Wyse DL, Hegeman AD (2013) “Optimized plant extractions for phytochemical library construction: Evaluating solvent systems using metabolomics approaches”, J. Am. Soc. Mass Spec. 24(S1), Minneapolis, MN, (poster).

8. Gentle C, Roe MR, Hegeman AD, and Cohen JD (2013) “Mild Base Catalyzed Deuteration of Polyphenolics for Improving their Quantification in Cold Hardy Wines by Multiple Reaction Monitoring Mass Spectrometry”, J. Am. Soc. Mass Spec. 24(S1), Minneapolis, MN, (poster).

7. Yu P, Ludwig-Müller J, Hegeman AD, and Cohen JD (2013) “Identification of indole-3-acetic acid modified proteins of Arabidopsis”, J. Am. Soc. Mass Spec. 24(S1), Minneapolis, MN, (poster).

6. Kreiser MA, Yu P, and Cohen JD (2013) “Identification of IBA in Arabidopsis using high-resolution mass spectrometry techniques”, Poster PS01-09, Abstracts, 21st Conference of the International Plant Growth Substances Association, Shanghai, China, June 18th-22nd, 2013, pp 39 (poster).

5. Yu P, Hegeman AD, and Cohen JD (2013) “Indole Metabolomics: Identification and quantification of indole-3-acetic acid pathway related compounds”, International Plant Growth Substances Association, 21stInternational Conference, June 18–22 2013, Shanghai, China, (poster).

4. Roe MR, Cohen JD, and Hegeman AD (2013) “Solvent- and gas-phase deuteration of polyphenolics informs their identification by mass spectrometry”, J. Am. Soc. Mass Spec. 24(S1), Minneapolis, MN, (oral).

3. Cohen JD (October 29, 2013) “The Center for Genome Biology, Institute of Genetics and Developmental Biology”, Chinese Academy of Sciences, “Targeted metabolomics in plant hormone research”, Beijing, China, (invited seminar, ‘Forum on Plant Genome Biology and Beyond’ series).

2. Cohen JD (October 30, 2013) Institute of Botany, Chinese Academy of Sciences, “Regulation of auxin levels in plants”, Beijing, China (invited seminar)

2012

1.  Hegeman AD (October 5-9, 2012) American Society for Mass Spectrometry, Asilomar Conference on Mass Spectrometry in Food Safety and Quality, “Stable Isotopic Labeling Approaches for Food Quality Analysis”, Asilomar Conference Center, Pacific Grove, CA, (invited speaker).

Hegeman Publications/Citations

Pubmed ‘Cohen JD’